Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs7146356 chr14:90750269 A/G 9.99E-6 109 12.7 21.32 1.03 KM Plot
LAML rs7146724 chr14:90766092 C/T 2.13E-6 110 12.7 21.32 1.03 KM Plot
LAML rs71484150 chr11:119727707 T/G 0.000139 109 15.7 12.68 0 KM Plot
LAML rs7149083 chr14:90754006 G/A 9.99E-6 109 12.7 21.32 1.03 KM Plot
LAML rs7208052 chr17:28606582 A/C 0.000116 111 19.82 15.7 6.1 KM Plot
LAML rs721159 chr12:1948977 C/T 0.000152 106 0 16.77 13.1 KM Plot
LAML rs7214248 chr17:28574177 G/A 0.000119 109 19.33 16.3 6.1 KM Plot
LAML rs7214991 chr17:28572360 C/T 2.89E-5 111 6.13 15.23 20.3 KM Plot
LAML rs7215330 chr17:28603685 T/C 9.25E-5 110 20.3 15.7 6.13 KM Plot
LAML rs7215860 chr17:58183556 A/G 0.000123 111 0 19.23 15.17 KM Plot
LAML rs7223821 chr17:28579320 C/T 0.000116 111 19.82 15.7 6.1 KM Plot
LAML rs7249250 chr19:12569854 C/A 1.39E-5 109 5.62 21.82 13.1 KM Plot
LAML rs7252123 chr19:12562017 G/A 1.05E-5 111 6.63 21.82 13.1 KM Plot
LAML rs7252660 chr19:12561751 C/T 1.05E-5 111 6.63 21.82 13.1 KM Plot
LAML rs7252927 chr19:12539778 A/G 1.87E-5 111 6.13 22.37 13.1 KM Plot